Genetic inventory of rare and endemic plant species of the Baikal Region

УДК 58.006:502.75+57.065(571.53/.54)

  • N. V. Kulakova Siberian Institute of Plant Physiology and Biochemistry SB RAS Email: kulakova@sifibr.irk.ru
  • A. V. Verkhozina Siberian Institute of Plant Physiology and Biochemistry SB RAS Email: allaverh@list.ru
  • I. G. Kondratov Federal state public scientific institution “Scientific centre for family health and human reproduction problems” Email: kondratov@mail.ru
Keywords: DNA barcoding, herbarium, ITS1-ITS2, matK, rbcL, trnL-trnF, trnH-psbA

Abstract

Replenishment of databases with genetic information of various species is necessary to solve topical issues of their taxonomy and systematics. One way to obtain genetic data from herbarium vouchers is to determine the nucleotide sequences of individual nuclear and chloroplast regions, which are widely used for molecular identification and plant phylogeny. Rare and endemic plant species are often the least represented in the genetic databases. In this work, we studied endemic plant species: Astragalus angarensis, Hedysarum turczaninovii, Hedysarum zundukii, Oxytropis popoviana, Papaver popovii, Gueldenstaedtia verna, Tulipa uniflora, Eutrema cordifolium, Megadenia pygmaea, Mannagettaea hummelii which have different conservation status in the Irkutsk Region and in the Republic of Buryatia. For Papaver popovii and Astragalus angarensis, genetic data have been obtained for the first time; for other species, information on universal DNA barcodes has been supplemented. In addition, genetic differences between Mannagettaea from the Republic of Buryatia and the type species Mannagettaea hummelii Harry Sm. (China) were shown. More detailed study on Mannagettaea is necessary to clarify its species diversity. Thus, results obtained supplemented the genetic information of the vouchers of the species presented in the herbarium of the Siberian Institute of Plant Physiology and Biochemistry of the Siberian Branch of the Russian Academy of Sciences (SIPPB SB RAS). This DNA-barcoding expands application of the herbarium in integrative studies using genetic data and contributes to the further study of rare endemic species of the Baikal Region.

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References

CBOL Plant Working Group. A DNA barcode for land plants // Proc. Natl. Acad. Sci. USA, 2009. - Vol. 106, No. 31. -P. 12794-12797. DOI: 10.1073/pnas.0905845106.

Doyle J. J., Doyle J. L. Isolation of Plant DNA from Fresh Tissue // Focus, 1990. - Vol. 12, № 1. - P. 13-15.

Keller A., Schleicher T., Schultz J., Mtiller T., Dandekar T., Wolf M. 5.8S-28S rRNA interaction and HMM-based ITS2 annotation // Gene, 2009. - Vol. 430. - P. 50-57. DOI: 10.1016/j.gene.2008.10.012

Nevill P.G., ZhongX., Tonti-Filippini J., Byrne M., Hislop M., Thiele K., van Leeuwen S., Boykin L. M. Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics // Plant Methods, 2020. -16, 1. DOI: 10.1186/s13007-019-0534-5

Newmaster S. G, Ragupathy S. Testing plant barcoding in a sister species complex of pantropical Acacia (Mimosoideae, Fabaceae) // Mol. Ecol. Res., 2009. - Vol. 9. - P. 172-180. DOI: 10.1111/j.1755-0998.2009.02642.x

Schuettpelz E., Schneider H., Huiet L., Windham M. D., Pryer K. M. A molecular phylogeny of the fern family Pteridaceae: assessing overall relationships and the affinities of previously unsampled genera // Mol. Phylogenet. Evol., 2007. - Vol. 44, № 3. - P. 1172-1185. DOI: 10.1016/j.ympev.2007.04.011

Taberlet P., Gielly L., Pautou G., Bouvet J. Universal primers for amplification of three non-coding regions of chloroplast DNA // Plant Mol. Biol., 1991. - Vol. 17. - № 5. - P. 1105-1109.

Verkhozina A. V., Kulakova N. V., Krivenko D. A., Murashko V. Convallaria majalis L. s. l. (Asparagaceae Juss.) in Baikal // Siberia BIO Web Conf., 2020. - Vol. 24. - 00092. DOI: 10.1051/bioconf/20202400092

Wattoo J. I., Saleem M. Z., Shahzad M. S., Arif A., Hameed A., Saleem M. A. DNA Barcoding: Amplification and sequence analysis of rbcL and matK genome regions in three divergent plant species // Adv. Life Sci., 2016. - Vol. 4. -№ 1. - P. 03-07.

White T. J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: a guide to methods and amplifications. - New York: Academic, 1990. - P. 315-322.

Wolf M., Achtziger M., Schultz J., Dandekar T., Mtiller T. Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures // RNA, 2005. - Vol. 11. - P. 1616-1623. DOI: 10.1261/ rna.2144205

Published
2023-12-04
How to Cite
Kulakova N. V., Verkhozina A. V., Kondratov I. G. Genetic inventory of rare and endemic plant species of the Baikal Region // Проблемы ботаники Южной Сибири и Монголии, 2023. Vol. 22, № 2. P. 150-153 DOI: 10.14258/pbssm.2023116. URL: http://journal.asu.ru/bpssm/article/view/pbssm.2023116.