Abstract
The genus Eucyclops is the most species-rich within the subfamily Eucyclopinae. Despite the significant research of Eucyclops in Russia, there are still vast areas including Siberia, the Baikal region, and the Far East with fragmentary study of this genus, particular with regard to molecular methods. In this work we have sequenced four molecular markers with different evolutionary rates and inheritance types (COI and 12S rRNA mtDNA, 18S rRNA and ITSn rDNA) to estimate the biodiversity of Eucyclops in the Baikal region. Five species E. serrulatus, E. speratus, E. macruroides, E. arcanus, and E. macrurus baicalocorrepus were identified through a combination of morphological and genetic methods in the Baikal region. The necessity for a taxonomic revision of endemic Baikal E. macrurus baicalocorrepus and E. macruroides baicalensis has been established. We assume that two forms of E. macrurus baicalocorrepus with short and long caudal rami are distinct endemic Baikal species. The genetic analysis of E. serrulatus, E. speratus, and E. macruroides revealed that the Baikal Cyclopoida, along with the Far Eastern and other Siberian representatives of the genus, form a distinct genetic lineage that differs from the majority of European representatives, with some exceptions.
References
Alekseev VR (1990) Eucyclops arcanus sp.n. (Copepoda, Cyclopoida) from the Water Bodies of the Baikal Region and the Bolshezemelskaya Tundra. Zoologichesky zhurnal [Journal of Zoology] 69: 135–135. [In Russian]
Alekseev VR (2019) Revision of the genus Eucyclops (Claus, 1893) and subfamily Eucyclopinae of the world fauna. Arthropoda Selecta 28: 490–514. https://doi.org/10.15298/arthsel.28.4.03
Alekseev VR (2022) Morphological and ecological variability in Eucyclops (Speratocyclops) arcanus sensu lato (Copepoda: Cyclopiformes) with description of E.(S.) a. arcticus ssp. n. from tundra bog in European Arctic. Arthropoda Selecta 31: 384–386. https://doi.org/10.15298/arthsel.31.4.02
Alekseev VR (2023) The modern distribution of two Eucyclops (Eucyclops) Claus, 1893 species (Cyclopoida: Copepoda) as a reflection of the Tethys Sea evolution. Hydrobiologia 850: 4801–4814. https://doi.org/10.1007/s10750-023-05198-3
Alekseev VR, Chaban OA (2021) New records of continental cyclopids (Crustacea: Copepoda: Cyclopiformes) from Eastern Siberia and Russian Far East. Arthropoda Selecta 30: 503–520. https://doi.org/10.15298/arthsel.30.4.06
Alekseev VR, Defaye D (2011) Taxonomic differentiation and world geographical distribution of the Eucyclops serrulatus group (Copepoda, Cyclopidae, Eucyclopinae). In: Defaye D, Suárez-Morales E, von Vaupel Klein JC (Eds) Studies on freshwater Copepoda: a volume in honour of Bernard Dussart. Brill, Leiden, 41–72. http://dx.doi.org/10.1163/ej.9789004181380.i-566.8
Alekseev VR, Dumont HJ, Pensaert J, Baribwegure D, Vanfleteren JR (2006) A redescription of Eucyclops serrulatus (Fischer, 1851) (Crustacea: Copepoda: Cyclopoida) and some related taxa, with a phylogeny of the E. serrulatus‐group. Zoologica Scripta 35: 123–147. https://doi.org/10.1111/j.1463-6409.2006.00223.x
Boxshall GA, Jaume D (2000) Making waves: The repeated colonization of fresh water by copepod crustaceans. Advances in Ecological Research 31: 61–79. https://doi.org/10.1016/S0065-2504(00)31007-8
Bucklin A, Ortman BD, Jennings RM, Nigro LM, Sweetman CJ, Copley NJ, Sutton T, Wiebe PH (2010) A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean). Deep Sea Research Part II: Topical Studies in Oceanography 57: 2234–2247. https://doi.org/10.1016/j.dsr2.2010.09.025
Calvo M, Alda F, Oliverio M, Templado J, Machordom A (2015) Surviving the Messinian salinity crisis? Divergence patterns in the genus Dendropoma (Gastropoda: Vermetidae) in the Mediterranean Sea. Molecular Phylogenetics and Evolution 91: 17–26. https://doi.org/10.1016/j.ympev.2015.05.004
Cornils A, Held C (2014) Evidence of cryptic and pseudocryptic speciation in the Paracalanus parvus species complex (Crustacea, Copepoda, Calanoida). Frontiers in Zoology 11: 1–17. https://doi.org/10.1186/1742-9994-11-19
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial Cytochrome C oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294–299.
Gaponova L, Hołyńska M (2019) Redescription and relationships of Eucyclops persistens (Copepoda: Cyclopidae) endemic to the Azov-Black Sea basin. Annales Zoologici 69: 427–446. https://doi.org/10.3161/00034541ANZ2019.69.2.010
Gaponova L, Hołyńska M (2022) New data on the Western Palearctic distribution of Eucyclops roseus (Copepoda: Cyclopidae), with notes on its taxonomic relationships. North-Western Journal of Zoology 18: 135–142.
Hamrová E, Krajicek M, Karanovic T, Černý M, Petrusek A (2012) Congruent patterns of lineage diversity in two species complexes of planktonic crustaceans, Daphnia longispina (Cladocera) and Eucyclops serrulatus (Copepoda), in East European mountain lakes. Zoological Journal of the Linnean Society 166: 754–767. https://doi.org/10.1111/j.1096-3642.2012.00864.x
Hołyńska M, Sługocki Ł, Ghaouaci S, Amarouayache M (2021) Taxonomic status of Macaronesian Eucyclops agiloides azorensis (Arthropoda: Crustacea: Copepoda) revisited-morphology suggests a Palearctic origin. European Journal of Taxonomy 750: 1–28. https://doi.org/10.5852/ejt.2021.750.1357
Karanovic T, Bláha M (2019) Taming extreme morphological variability through coupling of molecular phylogeny and quantitative phenotype analysis as a new avenue for taxonomy. Scientific Reports 9: 2429. https://doi.org/10.1038/s41598-019-38875-2
Kochanova E, Mayor T, Väinölä R (2024) Cryptic diversity and speciation in an endemic copepod crustacean Harpacticella inopinata within Lake Baikal. Ecology and Evolution 14: e11471. https://doi.org/10.1002/ece3.11471
Kochanova E, Nair A, Sukhikh N, Väinölä R, Husby A (2021) Patterns of Cryptic Diversity and Phylogeography in Four Freshwater Copepod Crustaceans in European Lakes. Diversity 13: 448. https://doi.org/10.3390/d13090448
Krajíček M, Fott J, Miracle MR, Ventura M, Sommaruga R, Kirschner P, Černý M (2016) The genus Cyclops (Copepoda, Cyclopoida) in Europe. Zoologica Scripta 45(6): 671–682. https://doi.org/10.1111/zsc.12183
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution 35: 1547–1549. https://doi.org/10.1093/molbev/msy096
Lee CE (1999) Rapid and repeated invasions of fresh water by the copepod Eurytemora affinis. Evolution 53: 1423–1434. https://doi.org/10.2307/2640889
Letunic I, Bork P (2021) Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49: W293–W296. https://doi.org/10.1093/nar/gkab301
Loeza-Quintana T, Carr CM, Khan T, Bhatt YA, Lyon SP, Hebert PDN, Adamowicz SJ (2019) Recalibrating the molecular clock for Arctic marine invertebrates based on DNA barcodes. Genome 62: 200–216. https://doi.org/10.1139/gen-2018-0107
Lynch AJ, Cooke SJ, Arthington AH, Baigun C, Bossenbroek L, Dickens C, Harrison I, Kimirei I, Langhans SD, Murchie KJ (2023) People need freshwater biodiversity. Wiley Interdisciplinary Reviews: Water 10: e1633. https://doi.org/10.1002/wat2.1633
Macêdo RL, Toutain M, Reid J, Soto I, Haubrock PJ, Cuthbert RN, Rocha O (2024) Substantial unrealised global biodiversity of continental microcrustaceans. Journal of Plankton Research 46: 338–347. https://doi.org/10.1093/plankt/fbae020
Machida RJ, Miya MU, Nishida M, Nishida S (2002) Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Marine Biotechnology 4: 406– 417. https://doi.org/10.1007/s10126-002-0033-x
Marrone F, Brutto SL, Hundsdoerfer AK, Arculeo M (2013) Overlooked cryptic endemism in copepods: systematics and natural history of the calanoid subgenus Occidodiaptomus Borutzky 1991 (Copepoda, Calanoida, Diaptomidae). Molecular Phylogenetics and Evolution 66: 190–202. https://doi.org/10.1016/j.ympev.2012.09.016
Mayor TY, Sheveleva NG, Sukhanova LV, Timoshkin OA, Kiril’chik SV (2010) Molecular-phylogenetic analysis of cyclopoids (Copepoda: Cyclopoida) from Lake Baikal and its water catchment basin. Russian Journal of Genetics 46: 1373–1380. https://doi.org/10.1134/S102279541011013X
Mayor TYu, Zaidykov IYu, Kirilchik SV (2024) The detection of three species complexes similar to Diacyclops galbinus, D. versutus and D. improcerus (Copepoda: Cyclopoida) from Lake Baikal. Limnology and Freshwater Biology 1: 14–47. https://doi.org/10.31951/2658-3518-2024-A-1-14
Mazepova GF (1955) Novaia forma Eucyclops serrulatus (Fisch.) (Copepoda, Сyclopoida) iz ozera Baikal [A new form of Eucyclops serrulatus (Fisch.) (Copepoda, Сyclopoida) from Lake Baikal]. In: Trudy Zoologicheskogo instituta Akademii nauk SSSR [Proceedings of the Zoological Institute of the USSR Academy of Sciences]. USSR Academy of Sciences Publishing House, Leningrad, 106–111. [In Russian]
Mazepova GF (1978) Tsiklopy ozera Baikal [Cyclopids of Lake Baikal]. Vol. 28 (49). Nauka, Novosibirsk, 143 pp. [In Russian]
Mercado-Salas NF, Suarez-Morales E (2014) On Kiefer’s American Eucyclops (Copepoda, Eucyclopinae): redescriptions and comments on the historical records of E. delachauxi, E. prionophorus, E. bondi and E. leptacanthus. ZooKeys 402: 1–41. https://doi.org/10.3897/zookeys.402.6112
Mercado-Salas NF, Suárez-Morales E (2021) On the taxonomic status of some south American Eucyclops (Copepoda: Cyclopidae: Eucyclopinae). Limnetica 40: 117–135. https://doi.org/10.23818/limn.40.09
Michels J, Büntzow M (2010) Assessment of Congo Red as a Fluorescence Marker for the Exoskeleton of Small Crustaceans and the Cuticle of Polychaetes. Journal of Microscopy 238: 95–101. https://doi.org/10.1111/j.1365-2818.2009.03360.x
Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Molecular Biology and Evolution 37: 1530–1534. https://doi.org/10.1093/molbev/msaa015
Miracle MR, Alekseev VR, Monchenko VI, Sentandreu V, Vicente E (2013) Molecular-genetic-based contribution to the taxonomy of the Acanthocyclops robustus group. Journal of Natural History 47: 863–888. https://doi.org/10.1080/00222933.2012.744432
Monchenko VI (1974) Shchelepnoroti tsiklopopodibni, tsiklopi (Cyclopidae) [Maxillopoda, Cyclopiformes, Cyclopoida (Cyclopidae)]. Vol. 27. Vidavnitstvo Naukova Dumka, Kiev, 452 pp. [In Ukrainian]
Novichkova AA, Chertoprud ES (2022) The species structure, biogeographical status, and the relation to the Beringian fauna of microcrustaceans (Cladocera, Copepoda) of the Magadan Area (Far East, Russia). Arthropoda Selecta 31: 283–292. https://doi.org/10.15298/arthsel.31.3.03
Novikov AA, Sharafutdinova DN, Mayor TY, Chertoprud ES (2024) A New Species of Diacyclops (Copepoda, Cyclopoida) from the D. crassicaudis (Sars, 1863) Species Group with Critical Taxonomy Remarks. Diversity 16: 208. https://doi.org/10.3390/d16040208
Novikov AA, Sukhikh NM, Chertoprud ES, Abramova EN (2022) Skrytoe raznoobrazie vidov roda Eucyclops (Copepoda, Cyclopoida) v delte reki Leny [Hidden Diversity of the Eucyclops Species (Copepoda, Cyclopoida) In the Lena River Delta]. In: Aktualnye problemy izucheniia rakoobraznykh [Actual Problems of Studying Crustaceans], 50 p. [In Russian]
Selden PA, Huys R, Stephenson MH, Heward AP, Taylor PN (2010) Crustaceans from bitumen clast in Carboniferous glacial diamictite extend fossil record of copepods. Nature Communications 1: 50. https://doi.org/10.1038/ncomms1049
Sheveleva NG, Mirabdullaev IM, Ivankina EA, Kirilchik SV (2012) Species composition and ecology of cyclopids in Lake Baikal. In: Aktualnye problemy izucheniia rakoobraznykh kontinentalnykh vod [Actual problems of studying crustaceans of continental waters]. Kostromskoi Pechatnyi Dom, Borok, Russia, 319–322 pp. [In Russian]
Sheveleva NG, Misharina EA, Makarkina NV (2020) New Data on Distribution and Morphological Characters of Cladocera (Daphniidae Straus, 1820) and Copepoda (Diaptomidae Sars, 1903, Cyclopidae Dana, 1846) in Lake Baikal. Izvestiya Irkutskogo gosudarstvennogo universiteta Seriya "Biologiya Ecologiya" [The Bulletin of Irkutsk State University Series "Biology Ecology"] 31: 76–92. https://doi.org/10.26516/2073-3372.2020.31.76 [In Russian]
Spears T, Abele LG, Kim W (1992) The monophyly of Brachyuran crabs: A phylogenetic study based on 18S rRNA. Systematic Biology 41: 446–461. https://doi.org/10.1093/sysbio/41.4.446
Sukhikh NM, Zavarzin DS, Alekseev VR (2023) Origin and taxonomic position of Far Eastern island populations of Eurytemora caspica tethysiana subsp. nov. Zoologischer Anzeiger 306: 119–137. https://doi.org/10.1016/j.jcz.2023.07.004
Timoshkin OA (Ed) (2009) Annotirovannyi spisok fauny ozera Baikal i ego vodosbornogo basseina [An annotated list of the fauna of Lake Baikal and its catchment area]. Vols 1–2. Nauka, Novosibirsk. [In Russian]
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
Xia X, Xie Z, Salemi M, Chen L, Wang Y (2003) An Index of Substitution Saturation and Its Application. Molecular phylogenetics and evolution 26: 1–7. https://doi.org/10.1016/S1055-7903(02)00326-3
Zagoskin MV, Lazareva VI, Grishanin AK, Mukha DV (2014) Phylogenetic Information Content of Copepoda Ribosomal DNA Repeat Units: ITS1 and ITS2 Impact. BioMed Research International: e926342. https://doi.org/10.1155/2014/926342
Acta Biologica Sibirica is a golden publisher, as we allow self-archiving, but most importantly we are fully transparent about your rights.
Authors may present and discuss their findings ahead of publication: at biological or scientific conferences, on preprint servers, in public databases, and in blogs, wikis, tweets, and other informal communication channels.
ABS allows authors to deposit manuscripts (currently under review or those for intended submission to ABS) in non-commercial, pre-print servers such as ArXiv.
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License (CC BY 4.0) that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).