Taxonomic status and phylogenetic relationships of the desert monitor Varanus griseus caspius (Squamata: Varanidae) from the territory of Uzbekistan
PDF
ePUB
XML

Keywords

DNA barcoding
herpetofauna
phylogeography
lizards
Varanus griseus

How to Cite

Kuchboev, A. E., Amirov, O. O., Yuldoshxonov, A. A., Shapaotov, R. K., Raxmatullayev, B. A., & Abduraupov, T. V. (2025). Taxonomic status and phylogenetic relationships of the desert monitor Varanus griseus caspius (Squamata: Varanidae) from the territory of Uzbekistan. Acta Biologica Sibirica, 11, 1261-1274. https://doi.org/10.5281/zenodo.17637628

Abstract

This study investigates the phylogenetic position and genetic diversity of Varanus griseus caspius, a widely distributed yet understudied subspecies of monitor lizard in Central Asia, with a focus on samples collected from Uzbekistan. Using DNA barcoding based on the mitochondrial cytochrome oxidase subunit I (COI) gene, molecular phylogenetic analyses were conducted via Maximum Likelihood (ML) and Bayesian Inference (BI) approaches. In addition, genetic distance and Disparity Index analyses were employed to assess evolutionary relationships among Varanus species. The V. g. caspius specimens formed a highly supported clade with V. griseus sequences in GenBank, indicating a close genetic affinity and confirming its subspecies status. Genetic distance values and substitution pattern similarities further revealed minimal divergence between V. g. caspius and other V. griseus lineages, suggesting recent common ancestry and ongoing gene flow. In contrast, significantly greater divergence was observed between V. g. caspius and other Varanus species. These findings clarify the phylogenetic placement of V. g. caspius within the V. griseus complex and provide essential baseline data for future taxonomic and conservation efforts.

https://doi.org/10.5281/zenodo.17637628
PDF
ePUB
XML

References

Abduraupov TV, Khojimatov OK, Bussmann RW (2023) Varanus griseus caspius Eichwald, 1831 – VARANIDAE. In: Ethnobiology of Uzbekistan. Ethnobiology. Springer, Cham, 891–895. https://doi.org/10.1007/978-3-031-23031-8_98

Ast JC (2001) Mitochondrial DNA Evidence and Evolution in Varanoidea (Squamata). Cladistics 17(3): 211–226. https://doi.org/10.1111/j.1096-0031.2001.tb00118.x

Bennett D (1995) A Little Book of Monitor Lizards. A Guide to the Monitor Lizards of the World and their Care in Captivity. Viper Press, Aberdeen, 208 pp.

Bondarenko OV (1989) Distribution and population density of the desert monitor in two landscape regions of Uzbekistan. Voprosy gerpetologii. VII Vsesoyuznaya gerpetologicheskaya konferenciya. Avtoreferaty dokladov [Herpetology Issues: Abstracts of the Reports from the VII All-Union Herpetological Conference] (Kiev, 26–29 September 1989). Naukova dumka, Kiev, 85–86. [In Russian]

Böhme W, Ahmed SH, Al-Sheikhly O F, Ararat K, Auer M, Khudur F, Langner C (2023) Desert Monitor Lizards (Squamata: Varanidae: Varanus: Psammosaurus) from the Middle East: Further Records of Nesterov’s Desert Monitor, Varanus (P.) nesterovi Böhme, Ehrlich, Milto, Orlov et Scholz, 2015, from Iraq, and Adjacent Localities of Varanus (P.) g. griseus (Daudin, 1803) and Varanus (P.) g. caspius (Eichwald, 1831), with Comments on Biogeography and Taxonomy. Russian Journal of Herpetology 30(6): 518–528. https://doi.org/10.30906/1026-2296-2023-30-6-518-528

Doughty P, Kealley L, Fitch A, Donnellan SC (2014) A new diminutive species of Varanus from the Dampier Peninsula, western Kimberley region, Western Australia. Records of the Western Australian Museum 29(2): 128–140. https://doi.org/10.18195/issn.0312-3162.29(2).2014.128-140

Farris JS (1982) Outgroups and Parsimony. Systematic Biology 31(3): 328–334. https://doi.org/10.1093/sysbio/31.3.328

Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39(4): 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x

Fuller S, Baverstock P, King D (1998) Biogeographic Origins of Goannas (Varanidae): A Molecular Perspective. Molecular Phylogenetics and Evolution 9(2): 294–307. https://doi.org/10.1006/mpev.1997.0476

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.

Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London. Series B: Biological Sciences 270: 313–321. https://doi.org/10.1098/rspb.2002.2218

Hekkala E, Shirley MH, Amato G, Austin JD, Charter S, Thorbjarnarson J, Vliet KA, Houck ML, Desalle R, Blum MJ (2011) An ancient icon reveals new mysteries: Mummy DNA resurrects a cryptic species within the Nile crocodile. Molecular Ecology 20(20): 4199–4215. https://doi.org/10.1111/j.1365-294X.2011.05245.x

Huelsenbeck JP, Hillis DM (1993) Success of phylogenetic methods in the four-taxon case. Systematic Biology 42(3): 247–264. https://doi.org/10.1093/sysbio/42.3.247

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. https://doi.org/10.1038/nmeth.4285

Katoh K, Misawa K, Kuma K, Miyata T (2002) MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30(14): 3059–3066. https://doi.org/10.1093/nar/gkf436

Koch A, Ziegler T, Böhme W, Arida E, Auliya M (2013) Pressing problems: distribution, threats, and conservation status of the monitor lizards (Varanidae: Varanus spp.) of Southeast Asia and the Indo-Australian Archipelago. Herpetological Conservation and Biology 8(3): 1–62.

Khodzhaev APh, Nuridjanov DA, Abduraupov TV (2019) Varanus griseus caspius. In: Red Data Book of the Republic of Uzbekistan. Vol. II. Chinor ENK, Tashkent, 109–117. [In Russian]

Khudirov KO, Mirzobahodurova ShR, Domulloeva ZK (2021) On the ecology of distribution and protection of the desert monitor – Varanus griseus (Daudin, 1873) in Tajikistan. In: Fundamental’nye osnovy nauki. Sbornik nauchnyh trudov po materialam XXX Mezhdunarodnoj nauchno-prakticheskoj konferencii [Fundamentals of Science. A Collection of Scientific Papers Based on the Proceedings of the XXX International Scientific and Practical Conference] (Anapa, April 20, 2021). Publishing House of the "Research Center for Economic and Social Processes" in the Southern Federal District, Anapa, 48–54. [In Russian]

Kuchboev AE, Amirov OO, Abramatov MB, Ruziev BH, Egamberdiyev MKH, Karimova RR (2024) Molecular species identification from fecal samples of Caprinae of Uzbekistan. Acta Biologica Sibirica 10: 1433–1443. http://doi.org/10.5281/zenodo.14279887

Kuchboev AE, Amirov OO, Yuldoshkhonov AA (2025) Molecular-genetic characterization of the species Eryx miliaris (Squamata: Boidae) distributed in Uzbekistan. Biological Sciences of Kazakhstan 1: 15–20. https://doi.org/10.52301/1684-940X-2025-1-15-20

Letunic I, Bork P (2021) Interactive Tree of Life (iTOL) v5: An online tool for phylogenetic tree display and annotation. Nucleic Acids Research 49(W1): W293–W296. https://doi.org/10.1093/nar/gkab301

Leviton AE, Anderson SC (1970) The amphibians and reptiles of Afghanistan: A checklist and key to their identification. Contributions to Herpetology 1(1): 1–15.

Maddison W P, Donoghue MJ, Maddison DR (1984) Outgroup analysis and parsimony.

Systematic Zoology 33(1): 83–103. https://doi.org/10.2307/2413134

Martin T, Guillemin M, Nivet-Mazerolles V, Landsmann C, Dubos J, Eudeline R, Stroud J (2017) The herpetofauna of central Uzbekistan. Amphibian & Reptile Conservation 11(1) [General Section]: 93–107 (e140).

Mertens R (1954) Die Familie der Warane (Varanidae). Abhandlungen der Senckenbergischen Naturforschenden Gesellschaft 487: 1–116.

Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von Haeseler A, Lanfear R (2020) IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Molecular Biology and Evolution 37(5): 1530–1534. https://doi.org/10.1093/molbev/msaa015

Nagy ZT, Sonet G, Glaw F, Vences M (2012) First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. PLoS ONE 7(3): e34506. https://doi.org/10.1371/journal.pone.0034506

Nuridjanov DA, Chirikova MA, Pestov MV, Zima YuA (2016) New information on the state of the population of the Central Asian Desert monitor Varanus griseus caspius (Eichwald, 1831) in Uzbekistan. In: Materialy Respublikanskoj nauchno-prakticheskoj konferencii "Sovremennye problemy sohraneniya redkih, ischezayushchih i maloizuchennyh zhivotnyh Uzbekistana" [Proceedings of the Republican Scientific and Practical Conference "Modern Problems of Conservation of Rare, Endangered, and Poorly Studied Animals of Uzbekistan"] (Tashkent, 9–10 September 2016). Tashkent, 154–158. [In Russian]

Quvatov AQ, Kuchboev AE, Mirzayev UT, Amirov OO, Atamuratova MSh, Narboev ZU (2023) Morphometric and molecular characteristics of Cottus jaxartensis. Egyptian Journal of Aquatic Biology & Fisheries 27(6): 215–223. https://doi.org/10.21608/ejabf.2023.328089

Paraskiv A (1956) On the economic importance of desert monitor lizards. Bulletin of Zoology 10(3): 55–62. [In Russian]

Pianka ER, King DR (2004) Varanoid Lizards of the World. Indiana University Press, 608 pp. Shadloo S, Mahmoodi S, Hosseinzadeh MS, Kazemi SM (2021) Prediction of habitat suitability for the desert monitor (Varanus griseus caspius) under the influence of future climate change. Journal of Arid Environments 186: 104416. https://doi.org/10.1016/j.jaridenv.2020.104416

Showler DAA (2018) Checklist of the Amphibians and Reptiles of the Republic of Uzbekistan with a review and summary of species distribution. Freely available PDF, 46 pp.

Sindaco R, Jeremčenko VK (2008) The reptiles of the Western Palearctic. Annotated check-list and distributional atlas of the turtles, crocodiles, amphisbaenians and lizards of Europe, North Africa, Middle East and Central Asia. Monografie della Societas Herpetologica Italica. Edizioni Belvedere, Latina, Italy, 579 pp.

Sobirov HF, Kuchboev AE, Abramatov MB (2025) Morphological and molecular identification of Nematodirus species (Nematoda, Molineidae) from domestic ruminants in Uzbekistan. Biosystems Diversity 33(2): 1–7. https://doi.org/10.15421/012524

Stuart BL, Inger RF, Voris HK (2006) High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian Forest frogs. Biology Letters 2(3): 470–474. https://doi.org/10.1098/rsbl.2006.0505

Tamura K, Stecher G, Kumar S (2021) MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution 38(7): 3022–3027. https://doi.org/10.1093/molbev/msab120

Tsellarius AY, Cherlin VA (1994) The duration of Varanus griseus (Reptilia, Sauria) egg incubation and the dates of hatchlings emerging in sandy deserts of Middle Asia. Selevinia 4: 43–46. [In Russian]

Ubaydullayev OK, Amirov OO, Quvatov AQ, Yusupov AP, Narboev ZU, Donayeva ShA, Nomonov JN (2025) Molecular-Genetic Analysis of Channa argus (Cantor, 1842) (Teleostei: Channidae) Distributed in the Kashkadarya River, Uzbekistan. Egyptian Journal of Aquatic Biology & Fisheries 29(1): 1171–1180. https://doi.org/10.21608/ejabf.2025.409621

Vidal N, Marin J, Sassi J, Battistuzzi FU, Donnellan S, Fitch AJ, Fry BG, Vonk FJ, Rodriguez de la Vega RC, Couloux A, Hedges SB (2012) Molecular evidence for an Asian origin of monitor lizards followed by Tertiary dispersals to Africa and Australasia. Biology Letters 8: 853–855. https://doi.org/10.1098/rsbl.2012.0460

Ziegler T, Schmitz A, Koch A, Böhme W (2007) A review of the subgenus Euprepiosaurus of Varanus (Squamata: Varanidae): morphological and molecular phylogeny, distribution and zoogeography, with an identification key for the members of the V. indicus and the V. prasinus species groups. Zootaxa 1472: 1–28. https://doi.org/10.11646/zootaxa.1472.1.1

Zima YA, Fedorenko VA (2024) The range of the desert monitor Varanus griseus caspius in Central Asia. Frontiers of Biogeography 17: e138199. https://doi.org/10.21425/fob.17.138199

Creative Commons License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Downloads

Download data is not yet available.

Metrics

Metrics Loading ...